Module Gnumed.business.gmExternalCare
GNUmed external care classes.
Expand source code
# -*- coding: utf-8 -*-
"""GNUmed external care classes.
"""
#============================================================
__author__ = "K.Hilbert <Karsten.Hilbert@gmx.net>"
__license__ = "GPL v2 or later"
# standard libs
import sys
import logging
if __name__ == '__main__':
sys.path.insert(0, '../../')
_ = lambda x:x
from Gnumed.pycommon import gmBusinessDBObject
from Gnumed.pycommon import gmPG2
from Gnumed.pycommon import gmTools
from Gnumed.business import gmOrganization
_log = logging.getLogger('gm.ext_care')
#============================================================
_SQL_get_external_care_items = """SELECT * FROM clin.v_external_care WHERE %s"""
class cExternalCareItem(gmBusinessDBObject.cBusinessDBObject):
"""Represents an external care item.
Note: Upon saving .issue being (non-empty AND not None) will
override .fk_health_issue (IOW, if your code wants to set
.fk_health_issue to something other than NULL it needs to
unset .issue explicitly (to u'' or None)).
"""
_cmd_fetch_payload = _SQL_get_external_care_items % "pk_external_care = %s"
_cmds_store_payload = [
"""UPDATE clin.external_care SET
comment = gm.nullify_empty_string(%(comment)s),
fk_encounter = %(pk_encounter)s,
issue = gm.nullify_empty_string(%(issue)s),
provider = gm.nullify_empty_string(%(provider)s),
fk_org_unit = %(pk_org_unit)s,
inactive = %(inactive)s,
fk_health_issue = (
CASE
WHEN gm.is_null_or_blank_string(%(issue)s) IS TRUE THEN %(pk_health_issue)s
ELSE NULL
END
)::integer
WHERE
pk = %(pk_external_care)s
AND
xmin = %(xmin_external_care)s
RETURNING
xmin AS xmin_external_care
""",
_SQL_get_external_care_items % "pk_external_care = %(pk_external_care)s"
]
_updatable_fields = [
'pk_encounter',
'pk_health_issue',
'pk_org_unit',
'issue',
'provider',
'comment',
'inactive'
]
#--------------------------------------------------------
def format(self, with_health_issue=True, with_address=False, with_comms=False):
lines = []
lines.append(_('External care%s #%s') % (
gmTools.bool2subst (
self._payload[self._idx['inactive']],
' (%s)' % _('inactive'),
'',
' [ERROR: .inactive is NULL]'
),
self._payload[self._idx['pk_external_care']]
))
if with_health_issue:
if self._payload[self._idx['pk_health_issue']] is None:
lines.append(' ' + _('Issue: %s') % self._payload[self._idx['issue']])
else:
lines.append(' ' + _('Health issue: %s') % self._payload[self._idx['issue']])
lines.append(' (' + _('also treated here') + ')')
if self._payload[self._idx['provider']] is not None:
lines.append(' ' + _('Provider: %s') % self._payload[self._idx['provider']])
lines.append(' ' + _('Location: %s@%s') % (self._payload[self._idx['unit']], self._payload[self._idx['organization']]))
unit = self.org_unit
if with_address:
adr = unit.address
if adr is not None:
lines.extend(adr.format())
if with_comms:
for comm in unit.comm_channels:
lines.append(' %s: %s%s' % (
comm['l10n_comm_type'],
comm['url'],
gmTools.bool2subst(comm['is_confidential'], _(' (confidential)'), '', '')
))
if self._payload[self._idx['comment']] is not None:
lines.append('')
lines.append(' ' + self._payload[self._idx['comment']])
return lines
#--------------------------------------------------------
def _get_org_unit(self):
return gmOrganization.cOrgUnit(self._payload[self._idx['pk_org_unit']])
org_unit = property(_get_org_unit)
#------------------------------------------------------------
def get_external_care_items(order_by=None, pk_identity=None, pk_health_issue=None, exclude_inactive=False, return_pks=False):
args = {
'pk_pat': pk_identity,
'pk_issue': pk_health_issue
}
where_parts = []
if pk_identity is not None:
where_parts.append('pk_identity = %(pk_pat)s')
if pk_health_issue is not None:
where_parts.append('pk_health_issue = %(pk_issue)s')
if exclude_inactive is True:
where_parts.append('inactive IS FALSE')
if len(where_parts) == 0:
where = 'TRUE'
else:
where = ' AND '.join(where_parts)
if order_by is not None:
where = '%s ORDER BY %s' % (
where,
order_by
)
cmd = _SQL_get_external_care_items % where
rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': args}], get_col_idx = True)
if return_pks:
return [ r['pk_external_care'] for r in rows ]
return [ cExternalCareItem(row = {'data': r, 'idx': idx, 'pk_field': 'pk_external_care'}) for r in rows ]
#------------------------------------------------------------
def create_external_care_item(pk_health_issue=None, issue=None, pk_org_unit=None, pk_encounter=None):
args = {
'pk_health_issue': pk_health_issue,
'issue': issue,
'pk_org_unit': pk_org_unit,
'enc': pk_encounter
}
cmd = """
INSERT INTO clin.external_care (
issue,
fk_health_issue,
fk_encounter,
fk_org_unit
) VALUES (
gm.nullify_empty_string(%(issue)s),
(CASE
WHEN gm.is_null_or_blank_string(%(issue)s) IS TRUE THEN %(pk_health_issue)s
ELSE NULL
END)::integer,
%(enc)s,
%(pk_org_unit)s
)
RETURNING pk"""
rows, idx = gmPG2.run_rw_queries(queries = [{'cmd': cmd, 'args': args}], return_data = True, get_col_idx = False)
return cExternalCareItem(aPK_obj = rows[0]['pk'])
#------------------------------------------------------------
def delete_external_care_item(pk_external_care=None):
args = {'pk': pk_external_care}
cmd = "DELETE FROM clin.external_care WHERE pk = %(pk)s"
gmPG2.run_rw_queries(queries = [{'cmd': cmd, 'args': args}])
return True
#============================================================
# main
#------------------------------------------------------------
if __name__ == "__main__":
if len(sys.argv) == 1:
sys.exit()
if sys.argv[1] != 'test':
sys.exit()
#from Gnumed.pycommon import gmLog2
#-----------------------------------------
def test_get_care_items():
for item in get_external_care_items(pk_identity = 12, order_by = 'provider'):
print(item.format())
#-----------------------------------------
test_get_care_items()Functions
def create_external_care_item(pk_health_issue=None, issue=None, pk_org_unit=None, pk_encounter=None)-
Expand source code
def create_external_care_item(pk_health_issue=None, issue=None, pk_org_unit=None, pk_encounter=None): args = { 'pk_health_issue': pk_health_issue, 'issue': issue, 'pk_org_unit': pk_org_unit, 'enc': pk_encounter } cmd = """ INSERT INTO clin.external_care ( issue, fk_health_issue, fk_encounter, fk_org_unit ) VALUES ( gm.nullify_empty_string(%(issue)s), (CASE WHEN gm.is_null_or_blank_string(%(issue)s) IS TRUE THEN %(pk_health_issue)s ELSE NULL END)::integer, %(enc)s, %(pk_org_unit)s ) RETURNING pk""" rows, idx = gmPG2.run_rw_queries(queries = [{'cmd': cmd, 'args': args}], return_data = True, get_col_idx = False) return cExternalCareItem(aPK_obj = rows[0]['pk']) def delete_external_care_item(pk_external_care=None)-
Expand source code
def delete_external_care_item(pk_external_care=None): args = {'pk': pk_external_care} cmd = "DELETE FROM clin.external_care WHERE pk = %(pk)s" gmPG2.run_rw_queries(queries = [{'cmd': cmd, 'args': args}]) return True def get_external_care_items(order_by=None, pk_identity=None, pk_health_issue=None, exclude_inactive=False, return_pks=False)-
Expand source code
def get_external_care_items(order_by=None, pk_identity=None, pk_health_issue=None, exclude_inactive=False, return_pks=False): args = { 'pk_pat': pk_identity, 'pk_issue': pk_health_issue } where_parts = [] if pk_identity is not None: where_parts.append('pk_identity = %(pk_pat)s') if pk_health_issue is not None: where_parts.append('pk_health_issue = %(pk_issue)s') if exclude_inactive is True: where_parts.append('inactive IS FALSE') if len(where_parts) == 0: where = 'TRUE' else: where = ' AND '.join(where_parts) if order_by is not None: where = '%s ORDER BY %s' % ( where, order_by ) cmd = _SQL_get_external_care_items % where rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': args}], get_col_idx = True) if return_pks: return [ r['pk_external_care'] for r in rows ] return [ cExternalCareItem(row = {'data': r, 'idx': idx, 'pk_field': 'pk_external_care'}) for r in rows ]
Classes
class cExternalCareItem (aPK_obj: int | dict = None, row: dict = None, link_obj=None)-
Represents an external care item.
Note: Upon saving .issue being (non-empty AND not None) will override .fk_health_issue (IOW, if your code wants to set .fk_health_issue to something other than NULL it needs to unset .issue explicitly (to u'' or None)).
Call init from child classes like so:
super().__init__(aPK_obj = aPK_obj, row = row, link_obj = link_obj)Args
aPK_obj- retrieve data from backend
- a simple value the primary key WHERE condition must be a simple column
- a dictionary of values the primary key WHERE condition must be a subselect consuming the dict and producing the single-value primary key
row- must hold the fields
- idx: a dict mapping field names to position
- data: the field values in a list (as returned by cursor.fetchone() in the DB-API)
- pk_field: the name of the primary key field OR
- pk_obj: a dictionary suitable for passed to cursor.execute and holding the primary key values, used for composite PKs
- for example:
row = { 'data': rows[0], 'idx': idx, 'pk_field': 'pk_XXX (the PK column name)', 'pk_obj': {'pk_col1': pk_col1_val, 'pk_col2': pk_col2_val} } rows, idx = gmPG2.run_ro_queries(queries = [{'cmd': cmd, 'args': args}], get_col_idx = True) objects = [ cChildClass(row = {'data': r, 'idx': idx, 'pk_field': 'the PK column name'}) for r in rows ]
Expand source code
class cExternalCareItem(gmBusinessDBObject.cBusinessDBObject): """Represents an external care item. Note: Upon saving .issue being (non-empty AND not None) will override .fk_health_issue (IOW, if your code wants to set .fk_health_issue to something other than NULL it needs to unset .issue explicitly (to u'' or None)). """ _cmd_fetch_payload = _SQL_get_external_care_items % "pk_external_care = %s" _cmds_store_payload = [ """UPDATE clin.external_care SET comment = gm.nullify_empty_string(%(comment)s), fk_encounter = %(pk_encounter)s, issue = gm.nullify_empty_string(%(issue)s), provider = gm.nullify_empty_string(%(provider)s), fk_org_unit = %(pk_org_unit)s, inactive = %(inactive)s, fk_health_issue = ( CASE WHEN gm.is_null_or_blank_string(%(issue)s) IS TRUE THEN %(pk_health_issue)s ELSE NULL END )::integer WHERE pk = %(pk_external_care)s AND xmin = %(xmin_external_care)s RETURNING xmin AS xmin_external_care """, _SQL_get_external_care_items % "pk_external_care = %(pk_external_care)s" ] _updatable_fields = [ 'pk_encounter', 'pk_health_issue', 'pk_org_unit', 'issue', 'provider', 'comment', 'inactive' ] #-------------------------------------------------------- def format(self, with_health_issue=True, with_address=False, with_comms=False): lines = [] lines.append(_('External care%s #%s') % ( gmTools.bool2subst ( self._payload[self._idx['inactive']], ' (%s)' % _('inactive'), '', ' [ERROR: .inactive is NULL]' ), self._payload[self._idx['pk_external_care']] )) if with_health_issue: if self._payload[self._idx['pk_health_issue']] is None: lines.append(' ' + _('Issue: %s') % self._payload[self._idx['issue']]) else: lines.append(' ' + _('Health issue: %s') % self._payload[self._idx['issue']]) lines.append(' (' + _('also treated here') + ')') if self._payload[self._idx['provider']] is not None: lines.append(' ' + _('Provider: %s') % self._payload[self._idx['provider']]) lines.append(' ' + _('Location: %s@%s') % (self._payload[self._idx['unit']], self._payload[self._idx['organization']])) unit = self.org_unit if with_address: adr = unit.address if adr is not None: lines.extend(adr.format()) if with_comms: for comm in unit.comm_channels: lines.append(' %s: %s%s' % ( comm['l10n_comm_type'], comm['url'], gmTools.bool2subst(comm['is_confidential'], _(' (confidential)'), '', '') )) if self._payload[self._idx['comment']] is not None: lines.append('') lines.append(' ' + self._payload[self._idx['comment']]) return lines #-------------------------------------------------------- def _get_org_unit(self): return gmOrganization.cOrgUnit(self._payload[self._idx['pk_org_unit']]) org_unit = property(_get_org_unit)Ancestors
Instance variables
var org_unit-
Expand source code
def _get_org_unit(self): return gmOrganization.cOrgUnit(self._payload[self._idx['pk_org_unit']])
Inherited members